Compare Boutique Hotels in Japan
Secret Bargains - Save an extra 10% or more on select Boutique Hotels
Get more for your budget and save up to 50% off select Secret Bargain hotels
Get even more value with CheapTickets Price Guarantee!
Change your flight without a fee on select flights
Featured Japan Boutique Hotels

The Screen
640-1 Shimogoryomae-cho Kyoto Kyoto
$143 nightly
The price is $158 total per night
$158 total
Dec 21 - Dec 22
You'll be centrally located in Kyoto with a stay at The Screen, within a 15-minute walk of Kyoto Imperial Palace and Teramachi Street.
Free WiFi
Restaurant

Hotel Kanra Kyoto
190 Kitamachi, Karasuma-dori Kyoto Kyoto
$233 nightly
The price is $257 total per night
$257 total
Jan 12 - Jan 13, 2026
Free Cancellation
Reserve now, pay when you stay
Hotel Kanra Kyoto is centrally located in Kyoto, a 5-minute walk from Higashi Honganji Temple and 5 minutes by foot from Shoseien Garden.
Spa
Free WiFi

The Capitol Hotel Tokyu
2-10-3 Nagata-cho Tokyo Tokyo-to
$497 nightly
The price is $547 total per night
$547 total
Jan 6 - Jan 7, 2026
Free Cancellation
Reserve now, pay when you stay
In the heart of Tokyo, The Capitol Hotel Tokyu is within a 5-minute drive of Tokyo Imperial Palace and Tokyo Tower.
Pool
Hot Tub

Solaria Nishitetsu Hotel Ginza
4-9-2 Ginza, Chuo-ku Tokyo Tokyo-to
$167 nightly
The price is $183 total per night
$183 total
Jan 5 - Jan 6, 2026
Free Cancellation
With a stay at Solaria Nishitetsu Hotel Ginza, you'll be centrally located in Tokyo, within a 5-minute drive of Tokyo Imperial Palace and Tokyo Tower.
Free WiFi
Restaurant

The Peninsula Tokyo
1-8-1 Yuraku-cho Tokyo Tokyo-to
$712 nightly
The price is $783 total per night
$783 total
Jan 4 - Jan 5, 2026
A stay at The Peninsula Tokyo places you in the heart of Tokyo, within a 5-minute drive of Tokyo Imperial Palace and Tokyo Tower.
Pool
Spa

Akan Tsuruga Bessou HINANOZA
2-8-1 Akanko-onsen Akan Kushiro Hokkaido
$721 nightly
The price is $797 total per night
$797 total
Dec 21 - Dec 22
When you stay at Akan Tsuruga Bessou HINANOZA in Kushiro, you'll be on a lake, within a 10-minute walk of Lake Akan and Akankohan Eco Museum Center.
Breakfast included
Parking included

Gagakuan
223-13 Kamiyanagichou, Youbai Street Kyoto Kyoto
Located in Kyoto (Shimogyo Ward), this vacation home is within a 15-minute walk of Kawaramachi Street and Kyoto Tower.
Kitchen
Free WiFi

Hotel Chinzanso Tokyo
2-10-8 Sekiguchi, Bunkyo-ku Tokyo Tokyo
Free Cancellation
Reserve now, pay when you stay
With a stay at Hotel Chinzanso Tokyo in Tokyo (Bunkyo), you'll be a 4-minute drive from Tokyo Dome and 5 minutes from Imperial Palace East Gardens.
Pool
Hot Tub

HOTEL IL PALAZZO
3-13-1 Haruyoshi, Chuo Ku Fukuoka Fukuoka-ken
$137 nightly
The price is $151 total per night
$151 total
Dec 23 - Dec 24
Free Cancellation
Reserve now, pay when you stay
With a stay at HOTEL IL PALAZZO, you'll be centrally located in Fukuoka, within a 5-minute drive of Canal City Hakata and Port of Hakata.
Breakfast included
Free WiFi

Hotel La Neige
Happo Wadanonomori Hakuba Nagano-ken
$500 nightly
The price is $549 total per night
$549 total
Jan 12 - Jan 13, 2026
When you stay at Hotel La Neige in Hakuba, you'll be in the mountains, a 1-minute drive from Hakuba Happo-One Ski Area and 5 minutes from Hakuba Iwatake Ski Resort.
Spa
Parking included

Hotel La Suite Kobe Harborland
7-2 Hatoba-cho Kobe Hyogo-ken
$291 nightly
The price is $320 total per night
$320 total
Jan 19 - Jan 20, 2026
With a stay at Hotel La Suite Kobe Harborland, you'll be centrally located in Kobe, just a 4-minute walk from Meriken Park and 6 minutes by foot from Kobe Harborland.
Spa
Free WiFi

Hotel Mystays Premier Dojima
2-4-1 Sonezakishinchi Osaka Osaka-fu
$56 nightly
The price is $62 total per night
$62 total
Dec 21 - Dec 22
Free Cancellation
Reserve now, pay when you stay
A stay at Hotel Mystays Premier Dojima places you in the heart of Osaka, a 5-minute drive from Kyocera Dome Osaka and 5 minutes from Nipponbashi.
Free WiFi
Restaurant
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Japan Boutique Hotels essential information
Boutique Hotels in Japan |
88 |
|---|---|
Highest price | $797 |
Cheapest price | $62 |
Total number of hotels in Japan | 39,737 |
Popular hotels | The Screen, Hotel Kanra Kyoto, The Capitol Hotel Tokyu, Solaria Nishitetsu Hotel Ginza, The Peninsula Tokyo, Akan Tsuruga Bessou HINANOZA, Gagakuan, Hotel Chinzanso Tokyo, HOTEL IL PALAZZO, Hotel La Neige, Hotel La Suite Kobe Harborland, Hotel Mystays Premier Dojima |
Most Recent Japan Hotel Reviews

Hotel Gracery Shinjuku
5 out of 5
Posted 14 hours ago
CheapTickets Verified Review
"Great staff and in good location. "
A verified traveler stayed at Hotel Gracery Shinjuku
More Boutique Hotels
Types of Hotels
Top 20 Japan Hotels
Hotels Near Japan
More to Explore in Japan
Top Picks
Hotels
Flights
Packages
- Cheap Kazakhstan Packages
- Cheap Taiwan Packages
- Cheap India Packages
- Cheap Palau Packages
- Cheap South Korea Packages
- Cheap Cambodia Packages
- Cheap British Indian Ocean Territory Packages
- Cheap Indonesia Packages
- Cheap Thailand Packages
- Cheap Vietnam Packages
- Cheap Russia Packages
- Cheap China Packages
- Cheap Hong Kong SAR Packages
- Cheap Malaysia Packages
- Cheap Singapore Packages
- Cheap Maldives Packages
- Cheap Nepal Packages
- Cheap Macau SAR Packages
- Cheap Philippines Packages





