Compare Cheap Hotels in San Juan Island

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Cheap San Juan Island Hotels

Inn to the Woods B&B

46 Elena Drive Friday Harbor WA

1.46 mi from city center

Located in Friday Harbor, Inn to the Woods B&B is in a national park, within a 10-minute drive of Whale Museum and Wescott Bay.

Breakfast included

Pet friendly

Friday Harbor House

130 West Street Friday Harbor WA

$279 nightly

$309 total

Jan 4 - Jan 5, 2026

Total with taxes and fees

3.01 mi from city center

When you stay at Friday Harbor House in Friday Harbor, you'll be near the airport, just steps from Whale Museum and 7 minutes by foot from San Juan Islands Museum of Art.

Snug Harbor Resort

1997 Mitchell Bay Rd Friday Harbor WA

$206 nightly

$227 total

Dec 20 - Dec 21

Total with taxes and fees

4.35 mi from city center

Located in Friday Harbor, Snug Harbor Resort is within a 10-minute drive of San Juan County Park and English Camp.

Friday Harbor Suites

680 Spring Street Friday Harbor WA

$195 nightly

$216 total

Dec 20 - Dec 21

Total with taxes and fees

Free Cancellation

Reserve now, pay when you stay

2.82 mi from city center

When you a stay at Friday Harbor Suites in Friday Harbor, you'll be near the airport, within a 5-minute walk of San Juan Historical Society and Museum and San Juan Islands Museum of Art.

Earthbox Inn & Spa

410 Spring Street Friday Harbor WA

$205 nightly

$227 total

Dec 31 - Jan 1, 2026

Total with taxes and fees

2.98 mi from city center

A stay at Earthbox Inn & Spa places you in the heart of Friday Harbor, a 1-minute drive from Whale Museum and 6 minutes from San Juan Golf & Tennis Club.

Pool

Hot Tub

Roche Harbor Resort

248 Reuben Memorial Dr Friday Harbor WA

$278 nightly

$307 total

Jan 1 - Jan 2, 2026

Total with taxes and fees

5.18 mi from city center

Located in Friday Harbor, Roche Harbor Resort is on the beach, within a 5-minute walk of Roche Harbor Marina and San Juan Islands Sculpture Park.

Tucker House Inn

275 C Street Friday Harbor WA

$177 nightly

$196 total

Dec 21 - Dec 22

Total with taxes and fees

3.19 mi from city center

With a stay at Tucker House Inn in Friday Harbor, you'll be near the airport, just a 5-minute walk from Whale Museum and 8 minutes by foot from San Juan Islands Museum of Art.

Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy

Friday Harbor WA

4.81 mi from city center

With a stay at this vacation home in Friday Harbor, you'll be on the beach, just steps from Wescott Bay and a 3-minute drive from San Juan Island National Historic Park.

Hot Tub

Kitchen

Vintage Island Home 2 Blocks From Town. 4 Bdrs, 2 Kitchens, 3 Bath. Can Sleep 14

Friday Harbor WA

3.16 mi from city center

With a stay at this vacation home in Friday Harbor, you'll be within a 10-minute walk of San Juan Islands Museum of Art and Whale Museum.

Perfect location to relax, unwind, renew and enjoy San Juan Island

Friday Harbor WA

5.27 mi from city center

Located in Friday Harbor, this vacation home is by the sea, a 5-minute drive from San Juan Islands Sculpture Park and 6 minutes from Roche Harbor Marina.

Bird Rock Hotel

35 First Street Friday Harbor WA

$184 nightly

$204 total

Dec 21 - Dec 22

Total with taxes and fees

3.03 mi from city center

A stay at Bird Rock Hotel places you in the heart of Friday Harbor, a 1-minute drive from Whale Museum and 10 minutes from American Camp Visitor Center.

Beach house, heated pool, hot tub, private beach, shared dock

Friday harbor WA

4.74 mi from city center

With a stay at this vacation home in Friday Harbor, you'll be on the beach, just steps from Wescott Bay and a 1-minute drive from San Juan Island National Historic Park.

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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

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San Juan Island hotels essential information

Accommodation	883 hotels
Lowest Price	$196
Highest Price	$309
Popular hotels	Inn to the Woods B&B, Friday Harbor House, Snug Harbor Resort, Friday Harbor Suites, Earthbox Inn & Spa, Roche Harbor Resort, Tucker House Inn, Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy, Vintage Island Home 2 Blocks From Town. 4 Bdrs, 2 Kitchens, 3 Bath. Can Sleep 14, Perfect location to relax, unwind, renew and enjoy San Juan Island, Bird Rock Hotel, Beach house, heated pool, hot tub, private beach, shared dock